› 3hft

X-ray diffraction
1.9Å resolution

Crystal structure of a putative polysaccharide deacetylase involved in o-antigen biosynthesis (wbms, bb0128) from bordetella bronchiseptica at 1.90 A resolution

Released:
DOI: 10.2210/pdb3hft/pdb
PDB entry 3hft coloured by chain, front view.
PDB entry 3hft coloured by chain, side view.
PDB entry 3hft coloured by chain, top view.
Source organism: Bordetella bronchiseptica
Entry authors: Joint Center for Structural Genomics, Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-241745 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
NodB homology domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 257 amino acids
Theoretical weight: 30.18 KDa
Source organism: Bordetella bronchiseptica
Expression system: Escherichia coli
UniProt:
  • Canonical: A0A0H3LGE5 (Residues: 1-256; Coverage: 100%)
Gene names: BB0128, wbmS
Structure domains: Glycoside hydrolase/deacetylase

Ligands and Environments

4 bound ligands:
Ligand ZN 1 x ZN
Ligand UNL 1 x UNL
Ligand EDO 5 x EDO
Ligand MPD 1 x MPD
1 modified residue:
Ligand MSE 6 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL9-2
Spacegroup: P41212
Unit cell:
a: 74.724Å b: 74.724Å c: 142.692Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.163 0.162 0.184
Expression system: Escherichia coli

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