› 3i10

X-ray diffraction
1.35Å resolution

Crystal structure of Putative glycerophosphoryl diester phosphodiesterase (NP_812074.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 1.35 A resolution

Released:
DOI: 10.2210/pdb3i10/pdb
PDB entry 3i10 coloured by chain, front view.
PDB entry 3i10 coloured by chain, side view.
PDB entry 3i10 coloured by chain, top view.
Source organism: Bacteroides thetaiotaomicron VPI-5482
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-183650 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
GP-PDE domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 278 amino acids
Theoretical weight: 31.81 KDa
Source organism: Bacteroides thetaiotaomicron VPI-5482
Expression system: Escherichia coli
UniProt:
  • Canonical: Q8A2Z3 (Residues: 25-301; Coverage: 99%)
Gene name: BT_3162
Sequence domains:
Structure domains: Phosphatidylinositol (PI) phosphodiesterase

Ligands and Environments

3 bound ligands:
Ligand ACT 2 x ACT
Ligand EDO 18 x EDO
Ligand PEG 1 x PEG
1 modified residue:
Ligand MSE 5 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL11-1
Spacegroup: C2221
Unit cell:
a: 54.223Å b: 76.978Å c: 132.8Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.151 0.15 0.172
Expression system: Escherichia coli

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