› 3i8n

X-ray diffraction
2.14Å resolution

A domain of a conserved functionally known protein from Vibrio parahaemolyticus RIMD 2210633.

Released:
DOI: 10.2210/pdb3i8n/pdb
PDB entry 3i8n coloured by chain, front view.
PDB entry 3i8n coloured by chain, side view.
PDB entry 3i8n coloured by chain, top view.
Source organism: Vibrio parahaemolyticus
Entry authors: Tan K, Tesar C, Bearden J, Joachimiak A, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-183338 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Hemolysin Chains: A, B
Molecule details ›
Chains: A, B
Length: 130 amino acids
Theoretical weight: 15.01 KDa
Source organism: Vibrio parahaemolyticus
Expression system: Escherichia coli
UniProt:
  • Canonical: Q87KR4 (Residues: 189-315; Coverage: 34%)
Gene name: VP2912
Sequence domains: CBS domain
Structure domains: CBS-domain

Ligands and Environments

1 bound ligand:
Ligand FMT 2 x FMT
1 modified residue:
Ligand MSE 12 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: P6522
Unit cell:
a: 69.301Å b: 69.301Å c: 255.136Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.221 0.219 0.264
Expression system: Escherichia coli

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