› 3i9x

X-ray diffraction
2.2Å resolution

Crystal structure of a mutT/nudix family protein from Listeria innocua

Released:
DOI: 10.2210/pdb3i9x/pdb
PDB entry 3i9x coloured by chain, front view.
PDB entry 3i9x coloured by chain, side view.
PDB entry 3i9x coloured by chain, top view.
Source organism: Listeria innocua
Entry authors: Bonanno JB, Gilmore M, Bain KT, Miller S, Romero R, Sauder JM, Burley SK, Almo SC, New York SGX Research Center for Structural Genomics (NYSGXRC)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-187859 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Nudix hydrolase domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 187 amino acids
Theoretical weight: 20.92 KDa
Source organism: Listeria innocua
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q92EH0 (Residues: 2-177; Coverage: 73%)
Gene name: lin0490
Sequence domains: NUDIX domain
Structure domains: Nucleoside Triphosphate Pyrophosphohydrolase

Ligands and Environments

1 bound ligand:
Ligand GOL 1 x GOL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 31-ID
Spacegroup: P6522
Unit cell:
a: 96.129Å b: 96.129Å c: 97.594Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.225 0.223 0.276
Expression system: Escherichia coli BL21(DE3)

Quick links