› 3ide

X-ray diffraction
3.35Å resolution

Structure of IPNV subviral particle

Released:
DOI: 10.2210/pdb3ide/pdb
PDB entry 3ide coloured by chain, front view.
PDB entry 3ide coloured by chain, side view.
PDB entry 3ide coloured by chain, top view.
Source organism: Infectious pancreatic necrosis virus - Sp
Primary publication:
Crystal structure of an Aquabirnavirus particle: insights into antigenic diversity and virulence determinism.
Coulibaly F, Chevalier C, Delmas B, Rey FA
J Virol 84 1792-9 (2010)
PMID: 20007275

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo 60-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-180631 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Capsid protein VP2 Chains: A, B, C, D, E
Molecule details ›
Chains: A, B, C, D, E
Length: 442 amino acids
Theoretical weight: 48.57 KDa
Source organism: Infectious pancreatic necrosis virus - Sp
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: Q703G9 (Residues: 1-442; Coverage: 46%)
Sequence domains: Birnavirus VP2 protein
Structure domains:

Ligands and Environments

2 bound ligands:
Ligand CO 3 x CO
Ligand CL 3 x CL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X06SA
Spacegroup: I23
Unit cell:
a: 303.431Å b: 303.431Å c: 303.431Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.218 0.217 0.233
Expression system: Spodoptera frugiperda

Quick links

Citations

6 review citations

The reverse genetics applied to fish RNA viruses.
Biacchesi S. (2011)
5 more

11 mentions without citation

Validated near-atomic resolution structure of bacteriophage epsilon15 derived from cryo-EM and modeling.
Baker et al. (2013)
10 more