3ilq

X-ray diffraction
2.05Å resolution

Structure of mCD1d with bound glycolipid BbGL-2c from Borrelia burgdorferi

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-135077 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (3 distinct):
Antigen-presenting glycoprotein CD1d1 Chain: C
Molecule details ›
Chain: C
Length: 285 amino acids
Theoretical weight: 32.61 KDa
Source organism: Mus musculus
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: P11609 (Residues: 19-297; Coverage: 88%)
Gene names: Cd1.1, Cd1d1
Sequence domains:
Structure domains:
Beta-2-microglobulin Chain: D
Molecule details ›
Chain: D
Length: 99 amino acids
Theoretical weight: 11.66 KDa
Source organism: Mus musculus
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: P01887 (Residues: 21-119; Coverage: 100%)
Gene name: B2m
Sequence domains: Immunoglobulin C1-set domain
Structure domains: Immunoglobulins

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG
2 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL7-1
Spacegroup: P21
Unit cell:
a: 41.706Å b: 97.791Å c: 55.421Å
α: 90° β: 106.94° γ: 90°
R-values:
R R work R free
0.21 0.208 0.251
Expression system: Spodoptera frugiperda