› 3imm

X-ray diffraction
2Å resolution

Crystal structure of Putative glycosyl hydrolase (YP_001301887.1) from Parabacteroides distasonis ATCC 8503 at 2.00 A resolution

Released:
DOI: 10.2210/pdb3imm/pdb
PDB entry 3imm coloured by chain, front view.
PDB entry 3imm coloured by chain, side view.
PDB entry 3imm coloured by chain, top view.
Source organism: Parabacteroides distasonis ATCC 8503
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-107909 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
3-keto-disaccharide hydrolase domain-containing protein Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 201 amino acids
Theoretical weight: 22.83 KDa
Source organism: Parabacteroides distasonis ATCC 8503
Expression system: Escherichia coli
UniProt:
  • Canonical: A6L9A1 (Residues: 23-222; Coverage: 100%)
Gene name: BDI_0489
Sequence domains: 3-keto-disaccharide hydrolase
Structure domains: Exo-inulinase; domain 1

Ligands and Environments

3 bound ligands:
Ligand NA 3 x NA
Ligand CL 1 x CL
Ligand TRS 1 x TRS
1 modified residue:
Ligand MSE 12 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL11-1
Spacegroup: P31
Unit cell:
a: 45.404Å b: 45.404Å c: 241.069Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.166 0.163 0.222
Expression system: Escherichia coli

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