› 3iy6

Electron Microscopy
12Å resolution

Variable domains of the computer generated model (WAM) of Fab E fitted into the cryoEM reconstruction of the virus-Fab E complex

Released:
DOI: 10.2210/pdb3iy6/pdb
PDB entry 3iy6 coloured by chain, front view.
PDB entry 3iy6 coloured by chain, side view.
PDB entry 3iy6 coloured by chain, top view.
Source organism: Rattus norvegicus
Primary publication:
Structural comparison of different antibodies interacting with parvovirus capsids.
Hafenstein S, Bowman VD, Sun T, Nelson CD, Palermo LM, Chipman PR, Battisti AJ, Parrish CR, Rossmann MG
J Virol 83 5556-66 (2009)
PMID: 19321620
Related structures: EMD-5111

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-213298 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
fragment from neutralizing antibody E (light chain) Chain: A
Molecule details ›
Chain: A
Length: 107 amino acids
Theoretical weight: 11.75 KDa
Source organism: Rattus norvegicus
fragment from neutralizing antibody E (heavy chain) Chain: B
Molecule details ›
Chain: B
Length: 115 amino acids
Theoretical weight: 12.74 KDa
Source organism: Rattus norvegicus

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this EM entry.
Resolution: 12Å
Relevant EMDB volumes: EMD-5111

Quick links

Citations

9 review citations

Twenty-Five Years of Structural Parvovirology.
Mietzsch et al. (2019)
8 more

2 mentions without citation

Structural comparison of different antibodies interacting with parvovirus capsids.
Hafenstein et al. (2009)
1 more