› 3izd

Electron Microscopy
8.6Å resolution

Model of the large subunit RNA expansion segment ES27L-out based on a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome. 3IZD is a small part (an expansion segment) which is in an alternative conformation to what is in already 3IZF.

Released:
DOI: 10.2210/pdb3izd/pdb
PDB entry 3izd coloured by chain, front view.
PDB entry 3izd coloured by chain, side view.
PDB entry 3izd coloured by chain, top view.
Source organism: Saccharomyces cerevisiae
Primary publication:
Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-A resolution.
Armache JP, Jarasch A, Anger AM, Villa E, Becker T, Bhushan S, Jossinet F, Habeck M, Dindar G, Franckenberg S, Marquez V, Mielke T, Thomm M, Berninghausen O, Beatrix B, Söding J, Westhof E, Wilson DN, Beckmann R
Proc Natl Acad Sci U S A 107 19748-53 (2010)
PMID: 20980660
Related structures: EMD-1667

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-196685 (preferred)
Entry contents:
1 distinct RNA molecule
Macromolecule:
rRNA expansion segment ES27L in an "out" conformation Chain: A
Molecule details ›
Chain: A
Length: 151 nucleotides
Theoretical weight: 48.72 KDa
Source organism: Saccharomyces cerevisiae

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 8.6Å
Relevant EMDB volumes: EMD-1667

Quick links

Citations

29 review citations

Ribosome biogenesis in the yeast Saccharomyces cerevisiae.
Woolford et al. (2013)
28 more

7 mentions without citation

Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-A resolution.
Armache et al. (2010)
6 more