› 3j9s

Electron Microscopy
2.6Å resolution

Single particle cryo-EM structure of rotavirus VP6 at 2.6 Angstrom resolution

Released:
DOI: 10.2210/pdb3j9s/pdb
PDB entry 3j9s coloured by chain, front view.
PDB entry 3j9s coloured by chain, side view.
PDB entry 3j9s coloured by chain, top view.
Source organism: Bovine rotavirus strain UK/G6
Primary publication:
Measuring the optimal exposure for single particle cryo-EM using a 2.6 �� reconstruction of rotavirus VP6.
Grant T, Grigorieff N
Elife 4 (2015)
PMID: 26023829
Related structures: EMD-6272

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-148408 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Intermediate capsid protein VP6 Chain: A
Molecule details ›
Chain: A
Length: 398 amino acids
Theoretical weight: 44.91 KDa
Source organism: Bovine rotavirus strain UK/G6
Expression system: Chlorocebus sabaeus
UniProt:
  • Canonical: P18610 (Residues: 1-397; Coverage: 100%)
Sequence domains: Rotavirus major capsid protein VP6
Structure domains:

Ligands and Environments

3 bound ligands:
Ligand ZN 1 x ZN
Ligand CL 1 x CL
Ligand CA 2 x CA
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 2.6Å
Relevant EMDB volumes: EMD-6272
Expression system: Chlorocebus sabaeus

Quick links

Citations

47 review citations

Unravelling biological macromolecules with cryo-electron microscopy.
Fernandez-Leiro et al. (2016)
46 more

6 mentions without citation

DeepTracer for fast de novo cryo-EM protein structure modeling and special studies on CoV-related complexes.
Pfab et al. (2021)
5 more