› 3jba

Electron Microscopy
12Å resolution

The U4 antibody epitope on human papillomavirus 16 identified by cryo-EM

Released:
DOI: 10.2210/pdb3jba/pdb
PDB entry 3jba coloured by chain, front view.
PDB entry 3jba coloured by chain, side view.
PDB entry 3jba coloured by chain, top view.
Source organisms:
Primary publication:
The U4 Antibody Epitope on Human Papillomavirus 16 Identified by Cryo-electron Microscopy.
Guan J, Bywaters SM, Brendle SA, Lee H, Ashley RE, Christensen ND, Hafenstein S
J Virol 89 12108-17 (2015)
PMID: 26401038
Related structures: EMD-6424

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
hetero 480-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-208881 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (3 distinct):
H16.U4 antibody light chain Chain: L
Molecule details ›
Chain: L
Length: 115 amino acids
Theoretical weight: 12.7 KDa
Source organism: Mus musculus
H16.U4 antibody heavy chain Chain: H
Molecule details ›
Chain: H
Length: 115 amino acids
Theoretical weight: 12.71 KDa
Source organism: Mus musculus
Major capsid protein L1 Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 478 amino acids
Theoretical weight: 53.45 KDa
Source organism: Human papillomavirus 16
Expression system: Homo sapiens
UniProt:
  • Canonical: P03101 (Residues: 9-486; Coverage: 95%)
Gene name: L1
Sequence domains: L1 (late) protein

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 12Å
Relevant EMDB volumes: EMD-6424
Expression system: Homo sapiens

Quick links

Citations

16 citation in other articles

Furin Cleavage of L2 during Papillomavirus Infection: Minimal Dependence on Cyclophilins.
Bronnimann et al. (2016)
15 more

2 mentions without citation

Practical lessons from protein structure prediction.
Ginalski et al. (2005)
1 more