› 3jx8

X-ray diffraction
2.16Å resolution

Crystal structure of Putative lipid binding protein (YP_001304415.1) from Parabacteroides distasonis ATCC 8503 at 2.16 A resolution

Released:
DOI: 10.2210/pdb3jx8/pdb
PDB entry 3jx8 coloured by chain, front view.
PDB entry 3jx8 coloured by chain, side view.
PDB entry 3jx8 coloured by chain, top view.
Source organism: Parabacteroides distasonis ATCC 8503
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-107954 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Putative auto-transporter adhesin head GIN domain-containing protein Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 250 amino acids
Theoretical weight: 27.15 KDa
Source organism: Parabacteroides distasonis ATCC 8503
Expression system: Escherichia coli
UniProt:
  • Canonical: A6LGH9 (Residues: 21-269; Coverage: 100%)
Gene name: BDI_3087
Sequence domains: Putative auto-transporter adhesin, head GIN domain
Structure domains: Pectate Lyase C-like

Ligands and Environments

3 bound ligands:
Ligand SO4 20 x SO4
Ligand GOL 20 x GOL
Ligand CL 1 x CL
1 modified residue:
Ligand MSE 24 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL11-1
Spacegroup: P41212
Unit cell:
a: 201.88Å b: 201.88Å c: 202.84Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.189 0.187 0.21
Expression system: Escherichia coli

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