› 3kdw

X-ray diffraction
1.7Å resolution

Crystal structure of Putative sugar binding protein (YP_001300177.1) from Bacteroides vulgatus ATCC 8482 at 1.70 A resolution

Released:
DOI: 10.2210/pdb3kdw/pdb
PDB entry 3kdw coloured by chain, front view.
PDB entry 3kdw coloured by chain, side view.
PDB entry 3kdw coloured by chain, top view.
Source organism: Phocaeicola vulgatus ATCC 8482
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-107891 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
DUF3826 domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 221 amino acids
Theoretical weight: 25.59 KDa
Source organism: Phocaeicola vulgatus ATCC 8482
Expression system: Escherichia coli
UniProt:
  • Canonical: A6L4E1 (Residues: 21-222; Coverage: 91%)
Gene name: BVU_2916
Sequence domains: Protein of unknown function (DUF3826)

Ligands and Environments

4 bound ligands:
Ligand CL 1 x CL
Ligand MPD 2 x MPD
Ligand MRD 1 x MRD
Ligand PO4 7 x PO4
1 modified residue:
Ligand MSE 6 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL11-1
Spacegroup: P3121
Unit cell:
a: 75.303Å b: 75.303Å c: 87.128Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.154 0.152 0.191
Expression system: Escherichia coli

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