› 3kk5

Electron Microscopy
10.6Å resolution

Crystal structure of PBCV-1 VP54 fitted into a cryo-EM reconstruction of the virophage Sputnik

Released:
DOI: 10.2210/pdb3kk5/pdb
PDB entry 3kk5 coloured by chain, front view.
PDB entry 3kk5 coloured by chain, side view.
PDB entry 3kk5 coloured by chain, top view.
Source organism: Acanthamoeba polyphaga
Primary publication:
Structural studies of the Sputnik virophage.
Sun S, La Scola B, Bowman VD, Ryan CM, Whitelegge JP, Raoult D, Rossmann MG
J Virol 84 894-7 (2010)
PMID: 19889775
Related structures: EMD-1662

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo 780-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-151710 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Major capsid protein Chains: A, B, C, D, E, F, G, H, I, J, K, L, M
Molecule details ›
Chains: A, B, C, D, E, F, G, H, I, J, K, L, M
Length: 437 amino acids
Theoretical weight: 48.2 KDa
Source organism: Acanthamoeba polyphaga
UniProt:
  • Canonical: P30328 (Residues: 1-437; Coverage: 100%)
Gene name: A430L
Sequence domains:

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 10.6Å
Relevant EMDB volumes: EMD-1662

Quick links

Citations

10 review citations

Structures of giant icosahedral eukaryotic dsDNA viruses.
Xiao et al. (2011)
9 more