› 3kog

X-ray diffraction
1.85Å resolution

Crystal structure of Putative pore-forming toxin (YP_001301288.1) from Bacteroides vulgatus ATCC 8482 at 1.85 A resolution

Released:
DOI: 10.2210/pdb3kog/pdb
PDB entry 3kog coloured by chain, front view.
PDB entry 3kog coloured by chain, side view.
PDB entry 3kog coloured by chain, top view.
Source organism: Phocaeicola vulgatus ATCC 8482
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-107902 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
DUF3869 domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 256 amino acids
Theoretical weight: 27.78 KDa
Source organism: Phocaeicola vulgatus ATCC 8482
Expression system: Escherichia coli
UniProt:
  • Canonical: A6L7K2 (Residues: 28-282; Coverage: 98%)
Gene name: BVU_4064
Sequence domains: Domain of unknown function (DUF3869)

Ligands and Environments

3 bound ligands:
Ligand ACT 3 x ACT
Ligand GOL 2 x GOL
Ligand MRD 2 x MRD
1 modified residue:
Ligand MSE 2 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL11-1
Spacegroup: I212121
Unit cell:
a: 66.796Å b: 70.337Å c: 104.1Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.184 0.182 0.214
Expression system: Escherichia coli

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