› 3kvp

X-ray diffraction
2.4Å resolution

Crystal Structure of Uncharacterized protein ymzC Precursor from Bacillus subtilis, Northeast Structural Genomics Consortium Target SR378A

Released:
DOI: 10.2210/pdb3kvp/pdb
PDB entry 3kvp coloured by chain, front view.
PDB entry 3kvp coloured by chain, side view.
PDB entry 3kvp coloured by chain, top view.
Source organism: Bacillus subtilis
Entry authors: Kuzin AP, Chen Y, Seetharaman J, Afonine P, Fang F, Xiao R, Cunningham K, Ma L, Chen CX, Everett JK, Nair R, Acton TB, Rost B, Montelione GT, Tong L, Hunt JF, Northeast Structural Genomics Consortium (NESG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
homo hexamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-128373 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Uncharacterized protein ymzC Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 72 amino acids
Theoretical weight: 8.67 KDa
Source organism: Bacillus subtilis
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: O31797 (Residues: 28-90; Coverage: 98%)
Gene names: BSU17350, ymzC
Sequence domains: YmzC-like protein
Structure domains: Immunoglobulin-like

Ligands and Environments

1 bound ligand:
Ligand ACY 2 x ACY
1 modified residue:
Ligand MSE 12 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 24-ID-C
Spacegroup: P3221
Unit cell:
a: 66.39Å b: 66.39Å c: 175.573Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.196 0.194 0.237
Expression system: Escherichia coli BL21(DE3)

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