› 3kzp

X-ray diffraction
2Å resolution

Crystal structure of putative diguanylate cyclase/phosphodiesterase from Listaria monocytigenes

Released:
DOI: 10.2210/pdb3kzp/pdb
PDB entry 3kzp coloured by chain, front view.
PDB entry 3kzp coloured by chain, side view.
PDB entry 3kzp coloured by chain, top view.
Source organism: Listeria monocytogenes
Entry authors: Klimecka MM, Chruszcz M, Zimmerman MD, Kudritska M, Savchenko A, Edwards A, Joachimiak A, Minor W, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-187035 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
EAL domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 235 amino acids
Theoretical weight: 27.5 KDa
Source organism: Listeria monocytogenes
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q8YAK7 (Residues: 1-235; Coverage: 100%)
Gene name: lmo0111
Sequence domains: EAL domain
Structure domains: EAL domain

Ligands and Environments

3 bound ligands:
Ligand CL 6 x CL
Ligand CA 2 x CA
Ligand CAC 2 x CAC
1 modified residue:
Ligand MSE 10 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: P212121
Unit cell:
a: 59.766Å b: 92.04Å c: 96.21Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.187 0.185 0.239
Expression system: Escherichia coli BL21(DE3)

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