› 3kzq

X-ray diffraction
2.1Å resolution

The crystal structure of the protein with unknown function from Vibrio parahaemolyticus RIMD 2210633

Released:
DOI: 10.2210/pdb3kzq/pdb
PDB entry 3kzq coloured by chain, front view.
PDB entry 3kzq coloured by chain, side view.
PDB entry 3kzq coloured by chain, top view.
Source organism: Vibrio parahaemolyticus
Entry authors: Zhang R, Weger A, Shackelford G, Joachimiak A, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-183347 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
DSBA-like thioredoxin domain-containing protein Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 208 amino acids
Theoretical weight: 23.95 KDa
Source organism: Vibrio parahaemolyticus
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: Q87MW5 (Residues: 1-208; Coverage: 100%)
Gene name: VP2116
Sequence domains: Thioredoxin
Structure domains: Glutaredoxin

Ligands and Environments

3 bound ligands:
Ligand PG6 6 x PG6
Ligand MG 4 x MG
Ligand GOL 8 x GOL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-BM
Spacegroup: P212121
Unit cell:
a: 86.304Å b: 118.108Å c: 206.674Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.181 0.179 0.218
Expression system: Escherichia coli BL21

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