› 3kzs

X-ray diffraction
2.1Å resolution

Crystal structure of glycosyl hydrolase family 5 (NP_809925.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 2.10 A resolution

Released:
DOI: 10.2210/pdb3kzs/pdb
PDB entry 3kzs coloured by chain, front view.
PDB entry 3kzs coloured by chain, side view.
PDB entry 3kzs coloured by chain, top view.
Source organism: Bacteroides thetaiotaomicron VPI-5482
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-183765 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
DUF4038 domain-containing protein Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 463 amino acids
Theoretical weight: 54.55 KDa
Source organism: Bacteroides thetaiotaomicron VPI-5482
Expression system: Escherichia coli
UniProt:
  • Canonical: Q8A905 (Residues: 22-483; Coverage: 100%)
Gene name: BT_1012
Sequence domains:
Structure domains: Glycosidases

Ligands and Environments

3 bound ligands:
Ligand SO4 16 x SO4
Ligand MRD 8 x MRD
Ligand MPD 2 x MPD
1 modified residue:
Ligand MSE 60 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL11-1
Spacegroup: R32
Unit cell:
a: 261.335Å b: 261.335Å c: 183.87Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.187 0.185 0.222
Expression system: Escherichia coli

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