› 3lho

X-ray diffraction
1.8Å resolution

Crystal structure of putative hydrolase (YP_751971.1) from Shewanella frigidimarina NCIMB 400 at 1.80 A resolution

Released:
DOI: 10.2210/pdb3lho/pdb
PDB entry 3lho coloured by chain, front view.
PDB entry 3lho coloured by chain, side view.
PDB entry 3lho coloured by chain, top view.
Source organism: Shewanella frigidimarina NCIMB 400
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-170583 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
2-oxoadipate dioxygenase/decarboxylase Chain: A
Molecule details ›
Chain: A
Length: 267 amino acids
Theoretical weight: 29.97 KDa
Source organism: Shewanella frigidimarina NCIMB 400
Expression system: Escherichia coli
UniProt:
  • Canonical: Q07XY2 (Residues: 1-266; Coverage: 100%)
Gene name: Sfri_3296
Sequence domains:
Structure domains: 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1

Ligands and Environments

5 bound ligands:
Ligand NI 1 x NI
Ligand SO4 3 x SO4
Ligand GOL 4 x GOL
Ligand PEG 2 x PEG
Ligand PG4 1 x PG4
1 modified residue:
Ligand MSE 6 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL9-2
Spacegroup: P212121
Unit cell:
a: 42.098Å b: 75.035Å c: 91.112Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.175 0.173 0.207
Expression system: Escherichia coli

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