› 3lmz

X-ray diffraction
1.44Å resolution

Crystal structure of Putative sugar isomerase. (YP_001305105.1) from Parabacteroides distasonis ATCC 8503 at 1.44 A resolution

Released:
DOI: 10.2210/pdb3lmz/pdb
PDB entry 3lmz coloured by chain, front view.
PDB entry 3lmz coloured by chain, side view.
PDB entry 3lmz coloured by chain, top view.
Source organism: Parabacteroides distasonis ATCC 8503
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-107966 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Xylose isomerase-like TIM barrel domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 257 amino acids
Theoretical weight: 29.5 KDa
Source organism: Parabacteroides distasonis ATCC 8503
Expression system: Escherichia coli
UniProt:
  • Canonical: A6LIG9 (Residues: 28-283; Coverage: 100%)
Gene name: BDI_3797
Sequence domains: Xylose isomerase-like TIM barrel
Structure domains: Divalent-metal-dependent TIM barrel enzymes

Ligands and Environments

3 bound ligands:
Ligand CIT 1 x CIT
Ligand PEG 1 x PEG
Ligand PGE 1 x PGE
1 modified residue:
Ligand MSE 8 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL9-2
Spacegroup: C2221
Unit cell:
a: 78.594Å b: 81.906Å c: 95.485Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.151 0.149 0.185
Expression system: Escherichia coli

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