› 3lyc

X-ray diffraction
2.3Å resolution

Crystal structure of Putative pectinase (YP_001304412.1) from Parabacteroides distasonis ATCC 8503 at 2.30 A resolution

Released:
DOI: 10.2210/pdb3lyc/pdb
PDB entry 3lyc coloured by chain, front view.
PDB entry 3lyc coloured by chain, side view.
PDB entry 3lyc coloured by chain, top view.
Source organism: Parabacteroides distasonis ATCC 8503
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-107952 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Putative auto-transporter adhesin head GIN domain-containing protein Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
Molecule details ›
Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
Length: 241 amino acids
Theoretical weight: 26.23 KDa
Source organism: Parabacteroides distasonis ATCC 8503
Expression system: Escherichia coli
UniProt:
  • Canonical: A6LGH6 (Residues: 27-266; Coverage: 98%)
Gene name: BDI_3084
Sequence domains: Putative auto-transporter adhesin, head GIN domain
Structure domains: Pectate Lyase C-like

Ligands and Environments

No bound ligands
1 modified residue:
Ligand MSE 80 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL11-1
Spacegroup: P212121
Unit cell:
a: 104.116Å b: 104.606Å c: 393.587Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.246 0.244 0.28
Expression system: Escherichia coli

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