› 3m1t

X-ray diffraction
1.62Å resolution

Crystal structure of Putative phosphohydrolase (YP_929327.1) from Shewanella amazonensis SB2B at 1.62 A resolution

Released:
DOI: 10.2210/pdb3m1t/pdb
PDB entry 3m1t coloured by chain, front view.
PDB entry 3m1t coloured by chain, side view.
PDB entry 3m1t coloured by chain, top view.
Source organism: Shewanella amazonensis SB2B
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-106697 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
HDOD domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 275 amino acids
Theoretical weight: 29.87 KDa
Source organism: Shewanella amazonensis SB2B
Expression system: Escherichia coli
UniProt:
  • Canonical: A1SBA1 (Residues: 1-274; Coverage: 100%)
Gene name: Sama_3455
Sequence domains: HDOD domain
Structure domains: Hypothetical protein af1432

Ligands and Environments

1 bound ligand:
Ligand GOL 1 x GOL
1 modified residue:
Ligand MSE 8 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL9-2
Spacegroup: P3121
Unit cell:
a: 69.729Å b: 69.729Å c: 124.569Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.183 0.182 0.201
Expression system: Escherichia coli

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