3mc6

X-ray diffraction
3.15Å resolution

Crystal structure of ScDPL1

Released:

Function and Biology Details

Reaction catalysed:
Sphinganine 1-phosphate = phosphoethanolamine + palmitaldehyde
Biochemical function:
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
PDBe Complex ID:
PDB-CPX-170218 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Sphingosine-1-phosphate lyase Chain: A
Molecule details ›
Chain: A
Length: 497 amino acids
Theoretical weight: 54.9 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Escherichia coli
UniProt:
  • Canonical: Q05567 (Residues: 103-589; Coverage: 83%)
Gene names: BST1, D9819.5, DPL1, YDR294C
Sequence domains: Pyridoxal-dependent decarboxylase conserved domain
Structure domains:
Sphingosine-1-phosphate lyase Chain: C
Molecule details ›
Chain: C
Length: 497 amino acids
Theoretical weight: 54.68 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Escherichia coli
UniProt:
  • Canonical: Q05567 (Residues: 103-589; Coverage: 83%)
Gene names: BST1, D9819.5, DPL1, YDR294C
Sequence domains: Pyridoxal-dependent decarboxylase conserved domain
Structure domains:

Ligands and Environments

1 bound ligand:
1 modified residue:

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X06SA
Spacegroup: F222
Unit cell:
a: 151.1Å b: 156.86Å c: 201.59Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.243 0.241 0.3
Expression system: Escherichia coli