› 3na6

X-ray diffraction
2Å resolution

Crystal structure of a succinylglutamate desuccinylase (TM1040_2694) from SILICIBACTER SP. TM1040 at 2.00 A resolution

Released:
DOI: 10.2210/pdb3na6/pdb
PDB entry 3na6 coloured by chain, front view.
PDB entry 3na6 coloured by chain, side view.
PDB entry 3na6 coloured by chain, top view.
Source organism: Ruegeria sp. TM1040
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo hexamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-172835 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Succinylglutamate desuccinylase/aspartoacylase Chain: A
Molecule details ›
Chain: A
Length: 331 amino acids
Theoretical weight: 36.26 KDa
Source organism: Ruegeria sp. TM1040
Expression system: Escherichia coli
UniProt:
  • Canonical: Q1GD40 (Residues: 1-330; Coverage: 100%)
Gene name: TM1040_2694
Sequence domains: Succinylglutamate desuccinylase / Aspartoacylase family
Structure domains: Zn peptidases

Ligands and Environments

3 bound ligands:
Ligand CL 1 x CL
Ligand CA 1 x CA
Ligand TRS 1 x TRS
1 modified residue:
Ligand MSE 11 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL9-2
Spacegroup: P6322
Unit cell:
a: 99.773Å b: 99.773Å c: 137.179Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.163 0.161 0.195
Expression system: Escherichia coli

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