› 3neh

X-ray diffraction
1.64Å resolution

Crystal structure of the protein LMO2462 from Listeria monocytogenes complexed with ZN and phosphonate mimic of dipeptide L-Leu-D-Ala

Released:
DOI: 10.2210/pdb3neh/pdb
PDB entry 3neh coloured by chain, front view.
PDB entry 3neh coloured by chain, side view.
PDB entry 3neh coloured by chain, top view.
Source organism: Listeria monocytogenes serotype 4b str. F2365
Entry authors: Fedorov AA, Fedorov EV, Cummings J, Raushel FM, Burley SK, Almo SC, New York SGX Research Center for Structural Genomics (NYSGXRC)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-163805 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Renal dipeptidase family protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 318 amino acids
Theoretical weight: 36.14 KDa
Source organism: Listeria monocytogenes serotype 4b str. F2365
Expression system: Escherichia coli
Structure domains: Metal-dependent hydrolases

Ligands and Environments

2 bound ligands:
Ligand L3A 2 x L3A
Ligand ZN 4 x ZN
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X4A
Spacegroup: P212121
Unit cell:
a: 53.834Å b: 79.453Å c: 152.014Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.198 0.197 0.219
Expression system: Escherichia coli

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