› 3nkg

X-ray diffraction
2Å resolution

Crystal Structure of GEBA250068378 from Sulfurospirillum deleyianum

Released:
DOI: 10.2210/pdb3nkg/pdb
PDB entry 3nkg coloured by chain, front view.
PDB entry 3nkg coloured by chain, side view.
PDB entry 3nkg coloured by chain, top view.
Source organism: Sulfurospirillum deleyianum DSM 6946
Entry authors: Kim Y, Marshall N, Cobb G, Eisen J, Kerfeld C, Joachimiak A, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-112252 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
DUF5625 domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 174 amino acids
Theoretical weight: 19.89 KDa
Source organism: Sulfurospirillum deleyianum DSM 6946
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: D1B2F0 (Residues: 20-190; Coverage: 90%)
Gene name: Sdel_1248
Sequence domains: Domain of unknown function (DUF5625)
Structure domains: Jelly Rolls

Ligands and Environments

2 bound ligands:
Ligand ACY 5 x ACY
Ligand GOL 3 x GOL
1 modified residue:
Ligand MSE 4 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: P21
Unit cell:
a: 53.373Å b: 39.414Å c: 88.575Å
α: 90° β: 95.45° γ: 90°
R-values:
R R work R free
0.172 0.169 0.214
Expression system: Escherichia coli BL21

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