› 3og9

X-ray diffraction
1.88Å resolution

Structure of YahD with Malic acid

Released:
DOI: 10.2210/pdb3og9/pdb
PDB entry 3og9 coloured by chain, front view.
PDB entry 3og9 coloured by chain, side view.
PDB entry 3og9 coloured by chain, top view.
Source organism: Lactococcus lactis subsp. lactis Il1403
Primary publication:
Regulation and structure of YahD, a copper-inducible α/β serine hydrolase of Lactococcus lactis IL1403.
Martinez J, Mancini S, Tauberger E, Weise C, Saenger W, Solioz M
FEMS Microbiol Lett 314 57-66 (2011)
PMID: 21059179

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-189980 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Dienelactone hydrolase domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 209 amino acids
Theoretical weight: 23.59 KDa
Source organism: Lactococcus lactis subsp. lactis Il1403
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9CJC1 (Residues: 1-206; Coverage: 100%)
Gene names: L79507, yahD
Sequence domains: Dienelactone hydrolase family
Structure domains: alpha/beta hydrolase

Ligands and Environments

1 bound ligand:
Ligand MLT 2 x MLT
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: BESSY BEAMLINE 14.1
Spacegroup: P212121
Unit cell:
a: 40.64Å b: 79.07Å c: 130.03Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.172 0.169 0.224
Expression system: Escherichia coli

Quick links

Citations

2 citation in other articles

A copper-induced quinone degradation pathway provides protection against combined copper/quinone stress in Lactococcus lactis IL1403.
Mancini et al. (2015)
1 more