› 3on6

X-ray diffraction
1.7Å resolution

Crystal structure of an exo-alpha-1,6-mannosidase (bacova_03626) from bacteroides ovatus at 1.70 a resolution

Released:
DOI: 10.2210/pdb3on6/pdb
PDB entry 3on6 coloured by chain, front view.
PDB entry 3on6 coloured by chain, side view.
PDB entry 3on6 coloured by chain, top view.
Source organism: Bacteroides ovatus ATCC 8483
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-108344 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Glycoside hydrolase family 125 protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 461 amino acids
Theoretical weight: 53.46 KDa
Source organism: Bacteroides ovatus ATCC 8483
Expression system: Escherichia coli
UniProt:
  • Canonical: A7M0J6 (Residues: 22-481; Coverage: 100%)
Gene name: BACOVA_03626
Sequence domains: Metal-independent alpha-mannosidase (GH125)
Structure domains: Glycosyltransferase

Ligands and Environments

3 bound ligands:
Ligand CL 4 x CL
Ligand EDO 9 x EDO
Ligand PEG 1 x PEG
1 modified residue:
Ligand MSE 30 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL11-1
Spacegroup: P21
Unit cell:
a: 51.613Å b: 91.138Å c: 99.124Å
α: 90° β: 92.35° γ: 90°
R-values:
R R work R free
0.135 0.133 0.166
Expression system: Escherichia coli

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