› 3op6

X-ray diffraction
2Å resolution

Crystal structure of an oligo-nucleotide binding protein (lpg1207) from Legionella pneumophila subsp. pneumophila str. philadelphia 1 at 2.00 A resolution

Released:
DOI: 10.2210/pdb3op6/pdb
PDB entry 3op6 coloured by chain, front view.
PDB entry 3op6 coloured by chain, side view.
PDB entry 3op6 coloured by chain, top view.
Source organism: Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-178678 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 152 amino acids
Theoretical weight: 16.77 KDa
Source organism: Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Expression system: Escherichia coli
UniProt:
  • Canonical: Q5ZW80 (Residues: 1-151; Coverage: 100%)
Gene name: lpg1207
Sequence domains: Aminoacyl-tRNA editing domain
Structure domains: YbaK/aminoacyl-tRNA synthetase-associated domain

Ligands and Environments

1 bound ligand:
Ligand EDO 2 x EDO
1 modified residue:
Ligand MSE 12 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL9-2
Spacegroup: P212121
Unit cell:
a: 54.005Å b: 63.828Å c: 84.986Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.197 0.195 0.231
Expression system: Escherichia coli

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