› 3ops

X-ray diffraction
2.2Å resolution

Crystal structure of mandelate racemase/muconate lactonizing protein FROM GEOBACILLUS SP. Y412MC10 complexed with magnesium/tartrate

Released:
DOI: 10.2210/pdb3ops/pdb
PDB entry 3ops coloured by chain, front view.
PDB entry 3ops coloured by chain, side view.
PDB entry 3ops coloured by chain, top view.
Source organism: Paenibacillus sp. Y412MC10
Entry authors: Malashkevich VN, Patskovsky Y, Ramagopal U, Toro R, Sauder JM, Burley SK, Almo SC, New York SGX Research Center for Structural Genomics (NYSGXRC)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assemblies composition:
monomeric (preferred)
homo dimer
Assembly name:
PDBe Complex ID:
PDB-CPX-112470 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Mandelate racemase/muconate lactonizing enzyme C-terminal domain-containing protein Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 392 amino acids
Theoretical weight: 44.3 KDa
Source organism: Paenibacillus sp. Y412MC10
Expression system: Escherichia coli
UniProt:
  • Canonical: D3EID5 (Residues: 2-382; Coverage: 100%)
Gene name: GYMC10_3367
Sequence domains: Enolase C-terminal domain-like
Structure domains:

Ligands and Environments

2 bound ligands:
Ligand MG 8 x MG
Ligand TAR 5 x TAR
1 modified residue:
Ligand MSE 32 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X29A
Spacegroup: C2
Unit cell:
a: 159.989Å b: 66.375Å c: 154.854Å
α: 90° β: 96.59° γ: 90°
R-values:
R R work R free
0.232 0.228 0.311
Expression system: Escherichia coli

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