› 3orj

X-ray diffraction
2.16Å resolution

Crystal structure of a sugar-binding protein (BACOVA_04391) from Bacteroides ovatus at 2.16 A resolution

Released:
DOI: 10.2210/pdb3orj/pdb
PDB entry 3orj coloured by chain, front view.
PDB entry 3orj coloured by chain, side view.
PDB entry 3orj coloured by chain, top view.
Source organism: Bacteroides ovatus ATCC 8483
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-108353 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Surface glycan-binding protein B xyloglucan binding domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 439 amino acids
Theoretical weight: 48.14 KDa
Source organism: Bacteroides ovatus ATCC 8483
Expression system: Escherichia coli
UniProt:
  • Canonical: A7M2Q4 (Residues: 30-467; Coverage: 100%)
Gene name: BACOVA_04391
Sequence domains: Surface glycan-binding protein B xyloglucan binding domain
Structure domains: Immunoglobulins

Ligands and Environments

3 bound ligands:
Ligand ZN 1 x ZN
Ligand CL 1 x CL
Ligand EDO 4 x EDO
1 modified residue:
Ligand MSE 5 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL11-1
Spacegroup: P212121
Unit cell:
a: 58.456Å b: 71.962Å c: 120.806Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.197 0.196 0.229
Expression system: Escherichia coli

Quick links