› 3p1u

X-ray diffraction
2.05Å resolution

Crystal structure of a SusD homolog (BDI_0600) from Parabacteroides distasonis ATCC 8503 AT 2.05 A resolution

Released:
DOI: 10.2210/pdb3p1u/pdb
PDB entry 3p1u coloured by chain, front view.
PDB entry 3p1u coloured by chain, side view.
PDB entry 3p1u coloured by chain, top view.
Source organism: Parabacteroides distasonis ATCC 8503
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-107910 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
SusD/RagB family nutrient-binding outer membrane lipoprotein Chains: A, B
Molecule details ›
Chains: A, B
Length: 529 amino acids
Theoretical weight: 59.74 KDa
Source organism: Parabacteroides distasonis ATCC 8503
Expression system: Escherichia coli
UniProt:
  • Canonical: A6L9L2 (Residues: 26-553; Coverage: 99%)
Gene name: BDI_0600
Sequence domains: Susd and RagB outer membrane lipoprotein
Structure domains: Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat

Ligands and Environments

1 bound ligand:
Ligand SO4 1 x SO4
1 modified residue:
Ligand MSE 16 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL11-1
Spacegroup: P6
Unit cell:
a: 130.242Å b: 130.242Å c: 114.822Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.244 0.243 0.265
Expression system: Escherichia coli

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