› 3p1v

X-ray diffraction
1.93Å resolution

Crystal structure of a metallo-endopeptidases (BACOVA_00663) from Bacteroides ovatus at 1.93 A resolution

Released:
DOI: 10.2210/pdb3p1v/pdb
PDB entry 3p1v coloured by chain, front view.
PDB entry 3p1v coloured by chain, side view.
PDB entry 3p1v coloured by chain, top view.
Source organism: Bacteroides ovatus ATCC 8483
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-108302 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Peptidase M64 N-terminal domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 407 amino acids
Theoretical weight: 46.97 KDa
Source organism: Bacteroides ovatus ATCC 8483
Expression system: Escherichia coli
UniProt:
  • Canonical: A7LS78 (Residues: 20-425; Coverage: 100%)
Gene name: BACOVA_00663
Sequence domains:
Structure domains:

Ligands and Environments

6 bound ligands:
Ligand ZN 4 x ZN
Ligand K 2 x K
Ligand CL 3 x CL
Ligand PO4 4 x PO4
Ligand DMS 1 x DMS
Ligand PEG 4 x PEG
1 modified residue:
Ligand MSE 18 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL9-2
Spacegroup: C2
Unit cell:
a: 72.919Å b: 84.963Å c: 139.758Å
α: 90° β: 99.56° γ: 90°
R-values:
R R work R free
0.172 0.17 0.207
Expression system: Escherichia coli

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