› 3p2c

X-ray diffraction
1.6Å resolution

Crystal structure of an exo-alpha-1,6-mannosidase (bacova_03347) from bacteroides ovatus at 1.60 a resolution

Released:
DOI: 10.2210/pdb3p2c/pdb
PDB entry 3p2c coloured by chain, front view.
PDB entry 3p2c coloured by chain, side view.
PDB entry 3p2c coloured by chain, top view.
Source organism: Bacteroides ovatus ATCC 8483
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-108337 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Glycoside hydrolase family 125 protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 463 amino acids
Theoretical weight: 53.57 KDa
Source organism: Bacteroides ovatus ATCC 8483
Expression system: Escherichia coli
UniProt:
  • Canonical: A7LZS1 (Residues: 26-487; Coverage: 95%)
Gene name: BACOVA_03347
Sequence domains: Metal-independent alpha-mannosidase (GH125)
Structure domains: Glycosyltransferase

Ligands and Environments

2 bound ligands:
Ligand EDO 13 x EDO
Ligand PGE 1 x PGE
1 modified residue:
Ligand MSE 32 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL9-2
Spacegroup: P21
Unit cell:
a: 64.722Å b: 89.854Å c: 90.387Å
α: 90° β: 105.61° γ: 90°
R-values:
R R work R free
0.136 0.134 0.168
Expression system: Escherichia coli

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