› 3p96

X-ray diffraction
2.05Å resolution

Crystal structure of Phosphoserine phosphatase SerB from Mycobacterium avium, native form

Released:
DOI: 10.2210/pdb3p96/pdb
PDB entry 3p96 coloured by chain, front view.
PDB entry 3p96 coloured by chain, side view.
PDB entry 3p96 coloured by chain, top view.
Source organism: Mycobacterium avium 104
Primary publication:
SAD phasing using iodide ions in a high-throughput structural genomics environment.
Abendroth J, Gardberg AS, Robinson JI, Christensen JS, Staker BL, Myler PJ, Stewart LJ, Edwards TE
J Struct Funct Genomics 12 83-95 (2011)
PMID: 21359836

Function and Biology Details

Reaction catalysed: 
O-phospho-L(or D)-serine + H(2)O = L(or D)-serine + phosphate
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-106204 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Phosphoserine phosphatase Chain: A
Molecule details ›
Chain: A
Length: 415 amino acids
Theoretical weight: 43.85 KDa
Source organism: Mycobacterium avium 104
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0QJI1 (Residues: 1-411; Coverage: 100%)
Gene names: MAV_3907, serB
Sequence domains:
Structure domains:

Ligands and Environments

3 bound ligands:
Ligand MG 1 x MG
Ligand CL 1 x CL
Ligand EDO 1 x EDO
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ALS BEAMLINE 5.0.1
Spacegroup: I222
Unit cell:
a: 65.53Å b: 109.19Å c: 134.32Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.231 0.229 0.281
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

4 review citations

Structure, mechanism, and inhibition of histone deacetylases and related metalloenzymes.
Lombardi et al. (2011)
3 more

10 mentions without citation

SAD phasing using iodide ions in a high-throughput structural genomics environment.
Abendroth et al. (2011)
9 more