› 3pet

X-ray diffraction
2.07Å resolution

Crystal structure of a putative adhesin (BF0245) from Bacteroides fragilis NCTC 9343 at 2.07 A resolution

Released:
DOI: 10.2210/pdb3pet/pdb
PDB entry 3pet coloured by chain, front view.
PDB entry 3pet coloured by chain, side view.
PDB entry 3pet coloured by chain, top view.
Source organism: Bacteroides fragilis NCTC 9343
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assemblies composition:
homo dimer
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-177512 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Putative auto-transporter adhesin head GIN domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 221 amino acids
Theoretical weight: 23.45 KDa
Source organism: Bacteroides fragilis NCTC 9343
Expression system: Escherichia coli
UniProt:
  • Canonical: Q5LIP7 (Residues: 25-244; Coverage: 100%)
Gene name: BF9343_0200
Sequence domains: Putative auto-transporter adhesin, head GIN domain
Structure domains: Pectate Lyase C-like

Ligands and Environments

3 bound ligands:
Ligand CL 2 x CL
Ligand ACT 2 x ACT
Ligand PG4 14 x PG4
1 modified residue:
Ligand MSE 4 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL9-2, SSRL BEAMLINE BL11-1
Spacegroup: P212121
Unit cell:
a: 38.59Å b: 60.7Å c: 205.11Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.178 0.176 0.21
Expression system: Escherichia coli

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