› 3pl2

X-ray diffraction
1.89Å resolution

Crystal structure of a 5-keto-2-deoxygluconokinase (NCgl0155, Cgl0158) from Corynebacterium glutamicum ATCC 13032 KITASATO at 1.89 A resolution

Released:
DOI: 10.2210/pdb3pl2/pdb
PDB entry 3pl2 coloured by chain, front view.
PDB entry 3pl2 coloured by chain, side view.
PDB entry 3pl2 coloured by chain, top view.
Source organism: Corynebacterium glutamicum
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Reaction catalysed: 
ATP + D-fructose = ADP + D-fructose 6-phosphate
Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-185676 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Carbohydrate kinase PfkB domain-containing protein Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 319 amino acids
Theoretical weight: 35.07 KDa
Source organism: Corynebacterium glutamicum
Expression system: Escherichia coli
UniProt:
  • Canonical: Q8NTZ3 (Residues: 22-339; Coverage: 94%)
Gene name: Cgl0158
Sequence domains: pfkB family carbohydrate kinase
Structure domains:

Ligands and Environments

1 bound ligand:
Ligand CIT 1 x CIT
1 modified residue:
Ligand MSE 20 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 23-ID-B
Spacegroup: P1
Unit cell:
a: 45.908Å b: 79.494Å c: 81.703Å
α: 101.86° β: 95.72° γ: 92.11°
R-values:
R R work R free
0.183 0.18 0.225
Expression system: Escherichia coli

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