› 3pvq

X-ray diffraction
2.1Å resolution

Crystal structure of a putative dipeptidyl-peptidase VI (BT_1314) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 2.10 A resolution

Released:
DOI: 10.2210/pdb3pvq/pdb
PDB entry 3pvq coloured by chain, front view.
PDB entry 3pvq coloured by chain, side view.
PDB entry 3pvq coloured by chain, top view.
Source organism: Bacteroides thetaiotaomicron VPI-5482
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-183748 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
NlpC/P60 domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 308 amino acids
Theoretical weight: 35.65 KDa
Source organism: Bacteroides thetaiotaomicron VPI-5482
Expression system: Escherichia coli
UniProt:
  • Canonical: Q8A860 (Residues: 22-328; Coverage: 100%)
Gene name: BT_1314
Sequence domains:
Structure domains:

Ligands and Environments

2 bound ligands:
Ligand CL 2 x CL
Ligand GOL 5 x GOL
2 modified residues:
Ligand MSE 18 x MSE
Ligand OCS 4 x OCS

Experiments and Validation Details

Entry percentile scores
X-ray source: ALS BEAMLINE 8.2.2
Spacegroup: P21
Unit cell:
a: 64.919Å b: 50.295Å c: 107.562Å
α: 90° β: 93.5° γ: 90°
R-values:
R R work R free
0.166 0.165 0.198
Expression system: Escherichia coli

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