› 3pz7

X-ray diffraction
2.44Å resolution

Crystal structure of Ccd1-DIX domain

Released:
DOI: 10.2210/pdb3pz7/pdb
PDB entry 3pz7 coloured by chain, front view.
PDB entry 3pz7 coloured by chain, side view.
PDB entry 3pz7 coloured by chain, top view.
Source organism: Homo sapiens
Entry authors: Liu YT, Wang JW, Chen L, Wu JW

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-172338 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Dixin Chain: A
Molecule details ›
Chain: A
Length: 91 amino acids
Theoretical weight: 10.63 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q155Q3 (Residues: 597-683; Coverage: 13%)
Gene names: CCD1, DIXDC1, KIAA1735
Sequence domains: DIX domain
Structure domains: Ribosomal Protein L25; Chain P

Ligands and Environments

1 bound ligand:
Ligand EDO 1 x EDO
1 modified residue:
Ligand MSE 2 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL24XU
Spacegroup: P6122
Unit cell:
a: 62.576Å b: 62.576Å c: 77.722Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.26 0.233 0.275
Expression system: Escherichia coli

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