› 3qns

X-ray diffraction
1.4Å resolution

DyPB from Rhodococcus jostii RHA1, crystal form 2

Released:
DOI: 10.2210/pdb3qns/pdb
PDB entry 3qns coloured by chain, front view.
PDB entry 3qns coloured by chain, side view.
PDB entry 3qns coloured by chain, top view.
Source organism: Rhodococcus jostii RHA1
Primary publication:
Characterization of dye-decolorizing peroxidases from Rhodococcus jostii RHA1.
Roberts JN, Singh R, Grigg JC, Murphy ME, Bugg TD, Eltis LD
Biochemistry 50 5108-19 (2011)
PMID: 21534572

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo hexamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-171142 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Iron-dependent peroxidase Chain: A
Molecule details ›
Chain: A
Length: 353 amino acids
Theoretical weight: 37.54 KDa
Source organism: Rhodococcus jostii RHA1
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: Q0SE24 (Residues: 1-350; Coverage: 100%)
Gene name: RHA1_ro02407
Sequence domains:

Ligands and Environments

3 bound ligands:
Ligand HEM 1 x HEM
Ligand SO4 2 x SO4
Ligand GOL 5 x GOL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL7-1
Spacegroup: R32
Unit cell:
a: 127.699Å b: 127.699Å c: 178.242Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.131 0.13 0.148
Expression system: Escherichia coli BL21

Quick links

Citations

17 review citations

Pathways for degradation of lignin in bacteria and fungi.
Bugg et al. (2011)
16 more

9 mentions without citation

Chlorite dismutases - a heme enzyme family for use in bioremediation and generation of molecular oxygen.
Hofbauer et al. (2014)
8 more