3r9x

X-ray diffraction
2.8Å resolution

Crystal structure of Era in complex with MgGDPNP, nucleotides 1506-1542 of 16S ribosomal RNA, and KsgA

Released:

Function and Biology Details

Reaction catalysed:
4 S-adenosyl-L-methionine + adenine(1518)/adenine(1519) in 16S rRNA = 4 S-adenosyl-L-homocysteine + N(6)-dimethyladenine(1518)/N(6)-dimethyladenine(1519) in 16S rRNA 
Biochemical function:
Biological process:
Cellular component:

Structure analysis Details

Assembly composition:
hetero trimer (preferred)
PDBe Complex ID:
PDB-CPX-130531 (preferred)
Entry contents:
2 distinct polypeptide molecules
1 distinct RNA molecule
Macromolecules (3 distinct):
GTPase Era Chain: A
Molecule details ›
Chain: A
Length: 307 amino acids
Theoretical weight: 34.77 KDa
Source organism: Aquifex aeolicus
Expression system: Escherichia coli
UniProt:
  • Canonical: O67800 (Residues: 1-301; Coverage: 100%)
Gene names: aq_1994, era, era1
Sequence domains:
Structure domains:
Ribosomal RNA small subunit methyltransferase A Chain: B
Molecule details ›
Chain: B
Length: 248 amino acids
Theoretical weight: 28.4 KDa
Source organism: Aquifex aeolicus
Expression system: Escherichia coli
UniProt:
  • Canonical: O67680 (Residues: 1-248; Coverage: 100%)
Gene names: aq_1816, ksgA, rsmA
Sequence domains: Ribosomal RNA adenine dimethylase
Structure domains:
RNA301 Chain: C
Molecule details ›
Chain: C
Length: 35 nucleotides
Theoretical weight: 11.21 KDa

Ligands and Environments

No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 22-BM
Spacegroup: C2
Unit cell:
a: 195.502Å b: 68.094Å c: 73.587Å
α: 90° β: 100.62° γ: 90°
R-values:
R R work R free
0.174 0.171 0.226
Expression system: Escherichia coli