› 3rg5

X-ray diffraction
2Å resolution

Crystal Structure of Mouse tRNA(Sec)

Released:
DOI: 10.2210/pdb3rg5/pdb
PDB entry 3rg5 coloured by chain, front view.
PDB entry 3rg5 coloured by chain, side view.
PDB entry 3rg5 coloured by chain, top view.
Source organism: Mus musculus
Primary publication:
Crystal structure analysis reveals functional flexibility in the selenocysteine-specific tRNA from mouse.
Ganichkin OM, Anedchenko EA, Wahl MC
PLoS One 6 e20032 (2011)
PMID: 21629646

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assemblies composition:
monomeric (preferred)
homo dimer
Assembly name:
PDBe Complex ID:
PDB-CPX-195915 (preferred)
Entry contents:
1 distinct RNA molecule
Macromolecule:
tRNA(Sec) Chains: A, B
Molecule details ›
Chains: A, B
Length: 86 nucleotides
Theoretical weight: 27.62 KDa
Source organism: Mus musculus
Expression system: Not provided
Sequence domains: Selenocysteine transfer RNA

Ligands and Environments

3 bound ligands:
Ligand SO4 2 x SO4
Ligand GOL 2 x GOL
Ligand ACT 2 x ACT
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: BESSY BEAMLINE 14.2
Spacegroup: P21
Unit cell:
a: 48.872Å b: 96.055Å c: 71.841Å
α: 90° β: 105.06° γ: 90°
R-values:
R R work R free
0.217 0.215 0.253
Expression system: Not provided

Quick links

Citations

4 review citations

The modified base isopentenyladenosine and its derivatives in tRNA.
Schweizer et al. (2017)
3 more

10 mentions without citation

The role of nucleobase interactions in RNA structure and dynamics.
Bottaro et al. (2014)
9 more