› 3s7v

X-ray diffraction
2.55Å resolution

Unassembled KI Polyomavirus VP1 Pentamer

Released:
DOI: 10.2210/pdb3s7v/pdb
PDB entry 3s7v coloured by chain, front view.
PDB entry 3s7v coloured by chain, side view.
PDB entry 3s7v coloured by chain, top view.
Source organism: Human polyomavirus 3
Primary publication:
Structures of the major capsid proteins of the human Karolinska Institutet and Washington University polyomaviruses.
Neu U, Wang J, Macejak D, Garcea RL, Stehle T
J Virol 85 7384-92 (2011)
PMID: 21543504

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo pentamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-143671 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Major capsid protein VP1 Chains: A, B, C, D, E, F, G, H, I, J
Molecule details ›
Chains: A, B, C, D, E, F, G, H, I, J
Length: 277 amino acids
Theoretical weight: 30.31 KDa
Source organism: Human polyomavirus 3
Expression system: Escherichia coli
UniProt:
  • Canonical: P0DOI2 (Residues: 32-304; Coverage: 72%)
Sequence domains: Polyomavirus coat protein
Structure domains: Capsid protein VP1,Polyomavirus

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X06SA
Spacegroup: P1
Unit cell:
a: 70.33Å b: 82.78Å c: 142.06Å
α: 87.01° β: 98.23° γ: 108.65°
R-values:
R R work R free
0.203 0.202 0.219
Expression system: Escherichia coli

Quick links

Citations

5 review citations

A cornucopia of human polyomaviruses.
DeCaprio et al. (2013)
4 more

3 mentions without citation

Structures of the major capsid proteins of the human Karolinska Institutet and Washington University polyomaviruses.
Neu et al. (2011)
2 more