› 3t4r

X-ray diffraction
2Å resolution

Lettuce Necrotic Yellow Virus Phosphoprotein C-Terminal Domain

Released:
DOI: 10.2210/pdb3t4r/pdb
PDB entry 3t4r coloured by chain, front view.
PDB entry 3t4r coloured by chain, side view.
PDB entry 3t4r coloured by chain, top view.
Source organism: Lettuce necrotic yellows virus isolate 318
Primary publication:
Structure of the C-terminal domain of lettuce necrotic yellows virus phosphoprotein.
Martinez N, Ribeiro EA, Leyrat C, Tarbouriech N, Ruigrok RW, Jamin M
J. Virol. 87 9569-78 (2013)
PMID: 23785215

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-190135 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Phosphoprotein Chain: A
Molecule details ›
Chain: A
Length: 81 amino acids
Theoretical weight: 9.56 KDa
Source organism: Lettuce necrotic yellows virus isolate 318
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: Q9E7N7 (Residues: 230-300; Coverage: 24%)
Gene name: P
Sequence domains: Lettuce necrotic yellow virus phosphoprotein C-terminal domain
Structure domains: Four Helix Bundle (Hemerythrin (Met), subunit A)

Ligands and Environments

1 bound ligand:
Ligand MG 1 x MG
1 modified residue:
Ligand MSE 3 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID14-4
Spacegroup: P4122
Unit cell:
a: 43.28Å b: 43.28Å c: 89.38Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.229 0.226 0.294
Expression system: Escherichia coli BL21

Quick links

Citations

5 citation in other articles

Solution and crystallographic structures of the central region of the phosphoprotein from human metapneumovirus.
Leyrat et al. (2013)
4 more

2 mentions without citation

Unraveling virus relationships by structure-based phylogenetic classification.
Ng et al. (2020)
1 more