› 3t8p

X-ray diffraction
2.35Å resolution

Crystal structure of d(CGGGTACCCG)4 as a four-way Holliday junction

Released:
DOI: 10.2210/pdb3t8p/pdb
PDB entry 3t8p coloured by chain, front view.
PDB entry 3t8p coloured by chain, side view.
PDB entry 3t8p coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
Structure of d(CGGGTACCCG)4 as a four-way Holliday junction.
Mandal PK, Venkadesh S, Gautham N
Acta Crystallogr Sect F Struct Biol Cryst Commun 67 1506-10 (2011)
PMID: 22139153

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo tetramer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-116920 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
DNA (5'-D(*CP*GP*GP*GP*TP*AP*CP*CP*CP*G)-3') Chains: A, B
Molecule details ›
Chains: A, B
Length: 10 nucleotides
Theoretical weight: 3.05 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

1 bound ligand:
Ligand CA 1 x CA
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: BRUKER AXS MICROSTAR
Spacegroup: C2
Unit cell:
a: 65.289Å b: 23.597Å c: 37.124Å
α: 90° β: 111.3° γ: 90°
R-values:
R R work R free
0.238 0.235 0.278
Expression system: Not provided

Quick links

Citations

3 citation in other articles

Crystal structure of a complex between β-glucopyranose and a macrocyclic receptor with dendritic multicharged water solubilizing chains.
Mandal et al. (2016)
2 more

1 mention without citation

Structure of d(CGGGTACCCG)4 as a four-way Holliday junction.
Mandal et al. (2011)