› 3tps

X-ray diffraction
1.85Å resolution

Crystal structure of M-PMV dUTPASE complexed with dUPNPP substrate

Released:
DOI: 10.2210/pdb3tps/pdb
PDB entry 3tps coloured by chain, front view.
PDB entry 3tps coloured by chain, side view.
PDB entry 3tps coloured by chain, top view.
Source organism: Mason-Pfizer monkey virus
Entry authors: Barabas O, Nemeth V, Vertessy BG

Function and Biology Details

Reaction catalysed: 
dUTP + H(2)O = dUMP + diphosphate
Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-139635 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Nucleocapsid protein-dUTPase Chain: A
Molecule details ›
Chain: A
Length: 152 amino acids
Theoretical weight: 16.17 KDa
Source organism: Mason-Pfizer monkey virus
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P07570 (Residues: 608-759; Coverage: 17%)
Gene name: gag-pro
Sequence domains: dUTPase
Structure domains: Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A

Ligands and Environments

3 bound ligands:
Ligand MG 1 x MG
Ligand DUP 1 x DUP
Ligand TRS 1 x TRS
1 modified residue:
Ligand CSO 1 x CSO

Experiments and Validation Details

Entry percentile scores
X-ray source: EMBL/DESY, HAMBURG BEAMLINE BW7B
Spacegroup: P63
Unit cell:
a: 60.708Å b: 60.708Å c: 64.363Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.17 0.169 0.193
Expression system: Escherichia coli BL21(DE3)

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