› 3tpw

X-ray diffraction
1.65Å resolution

CRYSTAL STRUCTURE OF M-PMV DUTPASE - DUPNPP complex revealing distorted ligand geometry (approach intermediate)

Released:
DOI: 10.2210/pdb3tpw/pdb
PDB entry 3tpw coloured by chain, front view.
PDB entry 3tpw coloured by chain, side view.
PDB entry 3tpw coloured by chain, top view.
Source organism: Mason-Pfizer monkey virus
Entry authors: Barabas O, Nemeth V, Vertessy BG

Function and Biology Details

Reaction catalysed: 
dUTP + H(2)O = dUMP + diphosphate
Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-139635 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Nucleocapsid protein-dUTPase Chain: A
Molecule details ›
Chain: A
Length: 152 amino acids
Theoretical weight: 16.16 KDa
Source organism: Mason-Pfizer monkey virus
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P07570 (Residues: 608-759; Coverage: 17%)
Gene name: gag-pro
Sequence domains: dUTPase
Structure domains: Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A

Ligands and Environments

3 bound ligands:
Ligand DUP 1 x DUP
Ligand MG 1 x MG
Ligand TRS 1 x TRS
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: EMBL/DESY, HAMBURG BEAMLINE X13
Spacegroup: P63
Unit cell:
a: 60.619Å b: 60.619Å c: 63.731Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.168 0.167 0.194
Expression system: Escherichia coli BL21(DE3)

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