› 3ufi

X-ray diffraction
2.18Å resolution

Crystal structure of a putative cell adhesion protein (BACOVA_04980) from Bacteroides ovatus ATCC 8483 at 2.18 A resolution

Released:
DOI: 10.2210/pdb3ufi/pdb
PDB entry 3ufi coloured by chain, front view.
PDB entry 3ufi coloured by chain, side view.
PDB entry 3ufi coloured by chain, top view.
Source organism: Bacteroides ovatus ATCC 8483
Primary publication:
A Distinct Type of Pilus from the Human Microbiome.
Xu Q, Shoji M, Shibata S, Naito M, Sato K, Elsliger MA, Grant JC, Axelrod HL, Chiu HJ, Farr CL, Jaroszewski L, Knuth MW, Deacon AM, Godzik A, Lesley SA, Curtis MA, Nakayama K, Wilson IA
Cell 165 690-703 (2016)
PMID: 27062925

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-108358 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Fimbrillin family protein Chain: A
Molecule details ›
Chain: A
Length: 297 amino acids
Theoretical weight: 33.28 KDa
Source organism: Bacteroides ovatus ATCC 8483
Expression system: Escherichia coli
UniProt:
  • Canonical: A7M4D9 (Residues: 25-320; Coverage: 100%)
Gene name: BACOVA_04980
Sequence domains: Fimbrillin-like
Structure domains:

Ligands and Environments

2 bound ligands:
Ligand SO4 4 x SO4
Ligand CL 4 x CL
2 modified residues:
Ligand MLY 16 x MLY
Ligand MSE 8 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: ALS BEAMLINE 8.2.2
Spacegroup: P63
Unit cell:
a: 176.66Å b: 176.66Å c: 51.171Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.179 0.178 0.202
Expression system: Escherichia coli

Quick links

Citations

10 review citations

The Type IX Secretion System (T9SS): Highlights and Recent Insights into Its Structure and Function.
Lasica et al. (2017)
9 more

2 mentions without citation

How far are we from automatic crystal structure solution via molecular-replacement techniques?
Burla et al. (2020)
1 more