› 3uk7

X-ray diffraction
2.05Å resolution

Crystal Structure of Arabidopsis thaliana DJ-1D

Released:
DOI: 10.2210/pdb3uk7/pdb
PDB entry 3uk7 coloured by chain, front view.
PDB entry 3uk7 coloured by chain, side view.
PDB entry 3uk7 coloured by chain, top view.
Source organism: Arabidopsis thaliana
Entry authors: Seo KH, Zhuang NN, Son DY, Lee KH

Function and Biology Details

Reaction catalysed: 
(R)-S-lactoylglutathione = glutathione + methylglyoxal
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Protein DJ-1 homolog D Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 396 amino acids
Theoretical weight: 42.82 KDa
Source organism: Arabidopsis thaliana
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9M8R4 (Residues: 1-388; Coverage: 100%)
Gene names: At3g02720, DJ1D, F13E7.34
Sequence domains: DJ-1/PfpI family
Structure domains: Rossmann fold

Ligands and Environments

No bound ligands
3 modified residues:
Ligand MSE 18 x MSE
Ligand CSX 3 x CSX
Ligand CSD 3 x CSD

Experiments and Validation Details

Entry percentile scores
X-ray source: PAL/PLS BEAMLINE 6C1
Spacegroup: P21
Unit cell:
a: 56.778Å b: 75.214Å c: 141.673Å
α: 90° β: 96.87° γ: 90°
R-values:
R R work R free
0.177 0.174 0.225
Expression system: Escherichia coli

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